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 signs and symptom


DualAlign: Generating Clinically Grounded Synthetic Data

arXiv.org Artificial Intelligence

Synthetic clinical data are increasingly important for advancing AI in healthcare, given strict privacy constraints on real-world EHRs, limited availability of annotated rare-condition data, and systemic biases in observational datasets. While large language models (LLMs) can generate fluent clinical text, producing synthetic data that is both realistic and clinically meaningful remains challenging. We introduce DualAlign, a framework that enhances statistical fidelity and clinical plausibility through dual alignment: (1) statistical alignment, which conditions generation on patient demographics and risk factors; and (2) semantic alignment, which incorporates real-world symptom trajectories to guide content generation. Using Alzheimer's disease (AD) as a case study, DualAlign produces context-grounded symptom-level sentences that better reflect real-world clinical documentation. Fine-tuning an LLaMA 3.1-8B model with a combination of DualAlign-generated and human-annotated data yields substantial performance gains over models trained on gold data alone or unguided synthetic baselines. While DualAlign does not fully capture longitudinal complexity, it offers a practical approach for generating clinically grounded, privacy-preserving synthetic data to support low-resource clinical text analysis.


Lisbon Computational Linguists at SemEval-2024 Task 2: Using A Mistral 7B Model and Data Augmentation

arXiv.org Artificial Intelligence

Language Processing (NLP) tasks, including in the Our overall best submission to the task achieved assessment of textual entailment relations. However, a macro F1-score of 0.80 (1st place on the leaderboard), these models are heavily susceptible to shortcut a consistency score of 0.72 (15th), and a learning (Du et al., 2023), factual inconsistency faithfulness score of 0.83 (11th). Our method excels (Xie et al., 2023), and performance degradation in classification accuracy, but fails at being when exposed to data from specialized domains, robust to perturbations on the statements, i.e. predicting such as in the case of medical data.


A Large Language Model Outperforms Other Computational Approaches to the High-Throughput Phenotyping of Physician Notes

arXiv.org Artificial Intelligence

High-throughput phenotyping, the automated mapping of patient signs and symptoms to standardized ontology concepts, is essential to gaining value from electronic health records (EHR) in the support of precision medicine. Despite technological advances, high-throughput phenotyping remains a challenge. This study compares three computational approaches to high-throughput phenotyping: a Large Language Model (LLM) incorporating generative AI, a Natural Language Processing (NLP) approach utilizing deep learning for span categorization, and a hybrid approach combining word vectors with machine learning. The approach that implemented GPT-4 (a Large Language Model) demonstrated superior performance, suggesting that Large Language Models are poised to be the preferred method for high-throughput phenotyping of physician notes.


High Throughput Phenotyping of Physician Notes with Large Language and Hybrid NLP Models

arXiv.org Artificial Intelligence

Deep phenotyping is the detailed description of patient signs and symptoms using concepts from an ontology. The deep phenotyping of the numerous physician notes in electronic health records requires high throughput methods. Over the past thirty years, progress toward making high throughput phenotyping feasible. In this study, we demonstrate that a large language model and a hybrid NLP model (combining word vectors with a machine learning classifier) can perform high throughput phenotyping on physician notes with high accuracy. Large language models will likely emerge as the preferred method for high throughput deep phenotyping of physician notes.


Two Directions for Clinical Data Generation with Large Language Models: Data-to-Label and Label-to-Data

arXiv.org Artificial Intelligence

Large language models (LLMs) can generate natural language texts for various domains and tasks, but their potential for clinical text mining, a domain with scarce, sensitive, and imbalanced medical data, is underexplored. We investigate whether LLMs can augment clinical data for detecting Alzheimer's Disease (AD)-related signs and symptoms from electronic health records (EHRs), a challenging task that requires high expertise. We create a novel pragmatic taxonomy for AD sign and symptom progression based on expert knowledge, which guides LLMs to generate synthetic data following two different directions: "data-to-label", which labels sentences from a public EHR collection with AD-related signs and symptoms; and "label-to-data", which generates sentences with AD-related signs and symptoms based on the label definition. We train a system to detect AD-related signs and symptoms from EHRs, using three datasets: (1) a gold dataset annotated by human experts on longitudinal EHRs of AD patients; (2) a silver dataset created by the data-to-label method; and (3) a bronze dataset created by the label-to-data method. We find that using the silver and bronze datasets improves the system performance, outperforming the system using only the gold dataset. This shows that LLMs can generate synthetic clinical data for a complex task by incorporating expert knowledge, and our label-to-data method can produce datasets that are free of sensitive information, while maintaining acceptable quality.


Discovering the Symptom Patterns of COVID-19 from Recovered and Deceased Patients Using Apriori Association Rule Mining

arXiv.org Artificial Intelligence

The COVID-19 pandemic has a devastating impact globally, claiming millions of lives and causing significant social and economic disruptions. In order to optimize decision-making and allocate limited resources, it is essential to identify COVID-19 symptoms and determine the severity of each case. Machine learning algorithms offer a potent tool in the medical field, particularly in mining clinical datasets for useful information and guiding scientific decisions. Association rule mining is a machine learning technique for extracting hidden patterns from data. This paper presents an application of association rule mining based Apriori algorithm to discover symptom patterns from COVID-19 patients. The study, using 2875 patient's records, identified the most common signs and symptoms as apnea (72%), cough (64%), fever (59%), weakness (18%), myalgia (14.5%), and sore throat (12%). The proposed method provides clinicians with valuable insight into disease that can assist them in managing and treating it effectively.


Early Prediction of Alzheimers Disease Leveraging Symptom Occurrences from Longitudinal Electronic Health Records of US Military Veterans

arXiv.org Artificial Intelligence

Early prediction of Alzheimer's disease (AD) is crucial for timely intervention and treatment. This study aims to use machine learning approaches to analyze longitudinal electronic health records (EHRs) of patients with AD and identify signs and symptoms that can predict AD onset earlier. We used a case-control design with longitudinal EHRs from the U.S. Department of Veterans Affairs Veterans Health Administration (VHA) from 2004 to 2021. Cases were VHA patients with AD diagnosed after 1/1/2016 based on ICD-10-CM codes, matched 1:9 with controls by age, sex and clinical utilization with replacement. We used a panel of AD-related keywords and their occurrences over time in a patient's longitudinal EHRs as predictors for AD prediction with four machine learning models. We performed subgroup analyses by age, sex, and race/ethnicity, and validated the model in a hold-out and "unseen" VHA stations group. Model discrimination, calibration, and other relevant metrics were reported for predictions up to ten years before ICD-based diagnosis. The study population included 16,701 cases and 39,097 matched controls. The average number of AD-related keywords (e.g., "concentration", "speaking") per year increased rapidly for cases as diagnosis approached, from around 10 to over 40, while remaining flat at 10 for controls. The best model achieved high discriminative accuracy (ROCAUC 0.997) for predictions using data from at least ten years before ICD-based diagnoses. The model was well-calibrated (Hosmer-Lemeshow goodness-of-fit p-value = 0.99) and consistent across subgroups of age, sex and race/ethnicity, except for patients younger than 65 (ROCAUC 0.746). Machine learning models using AD-related keywords identified from EHR notes can predict future AD diagnoses, suggesting its potential use for identifying AD risk using EHR notes, offering an affordable way for early screening on large population.


Mining Themes in Clinical Notes to Identify Phenotypes and to Predict Length of Stay in Patients admitted with Heart Failure

arXiv.org Artificial Intelligence

Heart failure is a syndrome which occurs when the heart is not able to pump blood and oxygen to support other organs in the body. Identifying the underlying themes in the diagnostic codes and procedure reports of patients admitted for heart failure could reveal the clinical phenotypes associated with heart failure and to group patients based on their similar characteristics which could also help in predicting patient outcomes like length of stay. These clinical phenotypes usually have a probabilistic latent structure and hence, as there has been no previous work on identifying phenotypes in clinical notes of heart failure patients using a probabilistic framework and to predict length of stay of these patients using data-driven artificial intelligence-based methods, we apply natural language processing technique, topic modeling, to identify the themes present in diagnostic codes and in procedure reports of 1,200 patients admitted for heart failure at the University of Illinois Hospital and Health Sciences System (UI Health). Topic modeling identified twelve themes each in diagnostic codes and procedure reports which revealed information about different phenotypes related to various perspectives about heart failure, to study patients' profiles and to discover new relationships among medical concepts. Each theme had a set of keywords and each clinical note was labeled with two themes - one corresponding to its diagnostic code and the other corresponding to its procedure reports along with their percentage contribution. We used these themes and their percentage contribution to predict length of stay. We found that the themes discovered in diagnostic codes and procedure reports using topic modeling together were able to predict length of stay of the patients with an accuracy of 61.1% and an Area under the Receiver Operating Characteristic Curve (ROC AUC) value of 0.828.


AI can predict probability of COVID-19 vs. flu based on symptoms

#artificialintelligence

Testing shortages, long waits for results, and an overtaxed health care system have made headlines throughout the COVID-19 pandemic. These issues can be further exacerbated in small or rural communities in the US and globally. Additionally, respiratory symptoms of COVID-19 such as fever and cough are also associated with the flu, which complicates non-lab diagnoses during certain seasons. A new study by George Mason University College of Health and Human Services researchers is designed to help identify which symptoms are more likely to indicate COVID during flu season. This is the first study to take seasonality into account.


Cervical cancer: What are the signs and symptoms?

FOX News

Fox News Flash top headlines are here. Check out what's clicking on Foxnews.com. January marks Cervical Cancer Awareness Month. Cervical cancer – which develops in a woman's cervix – is the fourth-most common cancer in women, according to the World Health Organization (WHO). The agency reports that more than 300,000 women die from cervical cancer every year and that an estimated 570 000 women were diagnosed with cervical cancer around the world in 2018.